annot8r: GO, EC and KEGG annotation of EST datasets
نویسندگان
چکیده
منابع مشابه
KAAS: KEGG Automatic Annotation Server
The number of complete and draft genomes has rapidly increased in recent years, and it has become increasingly important to identify the functional properties and biological roles of genes in these genomes. We have been developing KEGG Orthology (KO) to classify gene functions. In KO, we annotate genes in complete genomes based on best-hit information using Smith-Waterman scores, as well as by ...
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In this paper we illustrate the Geo Data Annotator (GDA), a framework which helps a user to build a ground-truth dataset, starting from two separate geographical datasets. GDA exploits two kinds of indices to ease the task of manual annotation: geographical-based and string-based. GDA provides also a mechanism to evaluate the quality of the built ground-truth dataset. This is achieved through a...
متن کاملKEGG as a reference resource for gene and protein annotation
KEGG (http://www.kegg.jp/ or http://www.genome.jp/kegg/) is an integrated database resource for biological interpretation of genome sequences and other high-throughput data. Molecular functions of genes and proteins are associated with ortholog groups and stored in the KEGG Orthology (KO) database. The KEGG pathway maps, BRITE hierarchies and KEGG modules are developed as networks of KO nodes, ...
متن کاملec adoption and critical success factors of ec in smes in iran
تجارت الکترونیکی شیوه اجرای مسئولیتها، تقابل با مشتریان و امور معمول عملیاتی در شرکتها را تغییر داده است. تجارت الکترونیکی در عمل تنها خرید و فروش کالاها را از طریق ابزار الکترونیک نمی باشد، بلکه تمام فعالیتهای لازم جهت انجام فرایند فروش را نیز در بر میگیرد. در اواخر دهه 1990 بسیاری از شرکتها فعالیتهای خود را به منظور دستیابی به مشتریان جدید و یا ارائه فرصتهای جدید به مشتریان موجود گسترش دادند...
EST-PAC HPC – a web portal for high-throughput EST annotation and protein sequence prediction
Expressed Sequence Tags (ESTs) are short DNA sequences generated by sequencing the transcribed cDNAs coming from a gene expression. They can provide significant functional, structural and evolutionary information and thus are a primary resource for gene discovery. EST annotation basically refers to the analysis of unknown ESTs that can be performed by database similarity search for possible ide...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2008
ISSN: 1471-2105
DOI: 10.1186/1471-2105-9-180